Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs6546562 chr2:70225397 G/A 3.93E-8 255 32.78 32.6 10.72 KM Plot
SARC rs6546563 chr2:70231347 T/C 4.35E-8 255 32.78 32.6 10.72 KM Plot
SARC rs6556992 chr5:96938058 A/G 1.6E-5 258 31.97 32.4 8.27 KM Plot
SARC rs6592154 chr11:71193219 A/G 2.68E-5 255 8.62 20.4 33.2 KM Plot
SARC rs6601437 chr8:10178537 C/T 5.7E-5 258 29.88 33.18 9.52 KM Plot
SARC rs6651251 chr8:129422806 T/C 1.74E-13 258 33.9 23.17 3.97 KM Plot
SARC rs6714570 chr2:70197347 A/G 3.13E-5 255 33.08 31.93 18.33 KM Plot
SARC rs67174294 chr3:42702550 G/A 1.16E-5 248 32.13 32.07 13.08 KM Plot
SARC rs6724348 chr2:70208454 T/C 5.89E-8 250 33.2 32.6 10.72 KM Plot
SARC rs6724718 chr2:220004243 A/G 7.66E-5 258 34.42 31.25 14.6 KM Plot
SARC rs6739563 chr2:201134216 A/C 1.67E-6 258 7.58 31.02 32.9 KM Plot
SARC rs6739989 chr2:171052518 A/G 2.76E-11 258 31.97 35.37 4.27 KM Plot
SARC rs6743293 chr2:171413964 A/T 4.48E-5 258 9.47 33.9 31.77 KM Plot
SARC rs6746059 chr2:152248704 A/G 0 258 32.4 27.72 1.07 KM Plot
SARC rs6751704 chr2:70199567 G/A 1.75E-6 256 32.4 31.93 10.83 KM Plot